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How to update an existing Conda environment with a .yml file

tools
conda
environment
management
Alex KataevbyAlex Kataev·Sep 26, 2024
TLDR

Want to refresh your Conda environment? Here's your command magic:

conda env update --name env_name --file file.yml --prune

Substitute env_name with your environment name and file.yml your YAML file's path. Notice the cool --prune flag? That mops up any obsolete packages.

Prepping your command

Match the .yml and Conda environment names

Before launching into your update, check that your .yml file's name entry syncs with your intended update's Conda environment name. If there's no match, update the .yml or switch up the command:

# Naming the baby right to avoid identity crisis conda env update --name myenv --file local.yml --prune

This ensures you don’t call forth a new environment when all you wanted was an update.

Say 'bye-bye' to the active environment

To avoid clashes with running programs or loaded packages, it's best to deactivate your environment first:

# Let's give it a short nap so we can do some cleaning conda deactivate conda env update --name myenv --file local.yml --prune

Got stacked environments? No sweat!

For the next-level folks dealing with stackable environments, here's how you take care of them:

# When it comes to stacked environments, the base is your friend conda activate base conda env update --name myenv --file local.yml --prune

This approach stabilizes nested activation, smoothing out dependency management for your Conda environment.

Common pitfalls and how to dodge them

Encourage reactivation

The sheer joy of updating environments comes with a small to-do: reenter the environment.

# Wakey wakey! Time to see the new you! conda deactivate conda env update --file whatever.yml --prune conda activate myenv

Remember to use the correct environment name when reactivating. Or else, you may find yourself lost in Conda land.

When you update, think expansion, not replacement

The best updates build upon the existing environment, not completely overthrow it. So, review those .yml files carefully to ensure your invited guests won't evict the original housemates.

Nailing seamless updates

Anchor your versions

Developers, beware of version mismatch. Define version constraints in your .yml file, as unwanted major upgrades may cause a compatibility turmoil.

Resolve with care

Conda's solver loves to find the best possible matches for you. So, make sure your .yml file is chock-full of compatible and sufficient dependencies. The solver might face eviction without it!

Variables demand consistency

If your environment revolves around specific variables, make sure those are a part of your .yml update. Supplementing with conda env config vars set is a great move to maintain consistency.