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Python pandas Filtering out nan from a data selection of a column of strings

python
dataframe
pandas
data-cleaning
Alex KataevbyAlex Kataev·Jan 2, 2025
TLDR

To exclude rows with NaN values in a pandas DataFrame, create a boolean mask with the .notna() method and use it to index the DataFrame:

import pandas as pd # Assuming 'df' is your DataFrame and 'col' is your favorite column # 'col' has agreed to be NaN-free in your DataFrame relationship filtered_df = df[df['col'].notna()]

This excellent line of strategy shows NaN who's boss in 'col', while keeping the rest of the DataFrame troops intact.

Spotlights on NaN expulsion techniques

Single vs Multiple Columns: Choose your battlefield

When your battlefront extends to several columns, aim to remove any row that plays host to NaN in all or any of the specified columns:

# NaN-Repellent: Vanquishes rows nurturing NaN in either 'column1' or 'column2' cleaned_df = df.dropna(subset=['column1', 'column2']) # Paranormal Activity Detector: Boots out rows where both 'column1' and 'column2' are haunted by NaN fully_cleaned_df = df[df[['column1', 'column2']].notna().all(axis=1)]

Exploiting Query Method for Swift Cleanup

Use query to pick a sweet apple from the tree, eschewing those infested by the nan-worm:

# This code makes a sweeping declaration - "No NaNs or 'N/A' allowed!" df_cleaned = df.query("column_name.notna() & column_name != 'N/A'", engine='python')

Root out disguised 'NaN' trespassers with RegEx

Beware! Some NaNs come incognito as 'N/A' or empty, ghost-like strings:

# 'Fear no more!' says RegEx, 'I shall root out the NANguise!' nan_filter = df['column_name'].str.match(r'^(?!$|N/A).*$', na=False) df_filtered = df[nan_filter]

Custom Filtering: Bringing out the big guns with list comprehensions

Big problems need big solutions. List comprehensions are heavy-duty machinery when you need to tackle multiple conditions or run a custom function:

# A forcefield that keeps out non-strings or ill-fitting suits (blanks) filtered_df = df[[not pd.isnull(x) and x.strip() != '' for x in df['column_name']]]

Advanced Data Ninja techniques

Custom Placeholders: NaN in disguise

Not every NaN is as obvious. They may be masquerading as an innocent '--' or a nondescript 'unknown':

# Unmasking the NANguise placeholders = ['', 'N/A', 'unknown', '--'] filtered_df = df[df['column_name'].apply(lambda x: x not in placeholders)]

Nullable Integer types: NaN's favorite hideout

Review nullability of your integers. While every integer is proud of its value, some are shy and hide behind a pd.NA mask:

# Stop 'int' from going undercover as pd.NA df = df.convert_dtypes()

Nullable String types: NaN's secret lair

The newer StringDtype in pandas is a secure vault to lock up the pd.NA:

# Keeping a tab on pd.NA's whereabouts df['column_name'] = df['column_name'].astype('string')